Appendix
Version Support
Versions of fMRIPrep available on the SCC. (D) marks the default version you
get when no version is named — note that it is not the newest build, so
pin a version explicitly in your scripts.
| Version | Notes |
|---|---|
| v20.2.5 | Long-term support release |
| v21.0.1 | |
| 22.0.2 | |
| 23.1.4 | |
| 23.2.3 (D) | SCC default |
| 24.1.1 | Used by the RCS data-preparation workshop material |
| 25.2.5 | Documented by this guide |
Resource Recommendations
Start here. These are the values in the example script:
| Resource | Request | SGE directive |
|---|---|---|
| Cores | 8 | #$ -pe omp 8 |
| Memory | 4 GB per core (32 GB total) | #$ -l mem_per_core=4G |
| Wall clock | 12 hours | #$ -l h_rt=12:00:00 |
| Configuration | Cores (-pe omp) |
Memory | Wall clock (h_rt) |
|---|---|---|---|
Anatomical only (--anat-only) |
|||
Volume only (--fs-no-reconall) |
|||
| Full run, with surfaces |
Disk Space
Troubleshooting
Getting Help
Contact Research Computing Services at help@scc.bu.edu.